PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr033094.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB
Protein Properties Length: 295aa    MW: 33741.5 Da    PI: 9.845
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr033094.2genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.13.1e-112459133
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...T CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg...k 33
                     +g+WT+eEd ll++ v+++G g+W+++ar  g   +
      Pbr033094.2 24 KGPWTAEEDGLLIEHVRLHGEGRWNSVARLAGmqlL 59
                     79****************************997442 PP

2Myb_DNA-binding51.72.1e-16132176147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg  T+ E+ +++d+++++G++ W+tIar ++ gRt++++k++w+++
      Pbr033094.2 132 RGHITPHEESIILDLHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 176
                      6778******************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.5871963IPR017930Myb domain
SuperFamilySSF466892.66E-82055IPR009057Homeodomain-like
SMARTSM007173.3E-623128IPR001005SANT/Myb domain
PfamPF002498.9E-92455IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.5E-202556IPR009057Homeodomain-like
CDDcd001672.56E-52655No hitNo description
SuperFamilySSF466896.68E-21112184IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.5E-20113133IPR009057Homeodomain-like
PROSITE profilePS5129423.403127181IPR017930Myb domain
SMARTSM007171.1E-14131179IPR001005SANT/Myb domain
PfamPF002493.0E-13132176IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-23134180IPR009057Homeodomain-like
CDDcd001671.49E-9136177No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MYLGMMAGGH QRGWGMIEDE AWRKGPWTAE EDGLLIEHVR LHGEGRWNSV ARLAGMQLLS  60
LSLSLSLSLS QLLTIVSLSL SLSLSLSLSL SLSPPTNPNK NVCLIRCCIG LKRNGKSCRL  120
RWLNYLRPEL KRGHITPHEE SIILDLHARW GNRWSTIARS LPGRTDNEIK NYWRTHFKKK  180
AKAPSDASER AKTRLLRRHK PHNQQQQQQN LQVDQEVKRI MSLLDENETK LPLYWPHAAD  240
HHQEQGFFYS MLDGNIVNVS MLEAASSNEV NFLWDGLWNL NDVHANFINT TRQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-1611318140108B-MYB
1gv2_A1e-1611318137105MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-1611318137105C-Myb DNA-Binding Domain
1msf_C1e-1611318137105C-Myb DNA-Binding Domain
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009357956.11e-151PREDICTED: transcription factor MYB21-like
TrEMBLM5XC731e-100M5XC73_PRUPE; Uncharacterized protein
STRINGGLYMA20G20980.13e-76(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118234108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.13e-61myb domain protein 305